What you need is the fuel system diagram.
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http://is.rely.net/3-12-3108-l-9syVMEIq ... 0A.jpg/img]
Study that and see if that doesnt help you, that should have all the fuel hoses. So that should answer the yellow circles.
The red circle... there should be a metal tube to nowhere that goes under the plenum. If its not there, take off that goofy 3 holed hose and just connect from the IAC to the metal pipe.
For the 3rd picture, those are actually vacuum lines, you do NOT want to connect the 2 because that wouldnt do anything. There is a small vacuum port off the back side of the plenum, sorta by the EGR. There should also be a place you could put a small vacuum line on that metal pipe that goes along the back (where the IAC ends up connecting to via the Y shaped hose)
Connect the bottom fuel pressure thing to the fitting near the hose where the Y shaped IAC hose is (i can see the port from the picture). Likewise, theres another one for the top one close by. Basically, the way it works is that is like one single line, you hook the far end to the plenum, then the top fuel regulator, then the bottom fuel regulator. Let me know if I need to be more clear because it seems clear as mud to me and I know what im talking about..
Last picture-
the red one goes to the middle port on the valve cover. The green one hooks into the factory black intake tube on the top (there should be a metal fitting coming out of the end). The yellow one is a turn down which goes under the plenum via a metal pipe to get vacuum for the passenger side valve cover PCV