I adjusted both the fixed pane and the moveable sunroof today. The fixed pane is now slightly above flush on both sides. The moveable glass is also slightly above flush when its in the CLOSED position. When the sunroof tilts up, it still does not go up as far as I think it should, but I can see the follower that runs in the track is at the end of travel. That's as far as it can go, so I guess that is just all of it.
Re-adjusting did not help my leak issue. Since I am certain my drains are clear, I am just going to let it ride. It just seems like this is a recipe for disaster.
A few pics of where the glass is adjusted to.
Passenger side of sunroof glass. Slightly above the fixed glass (measures 0.03in).
Passenger side. Slightly above top of roof (measures 0.06in).
Driver side. Slightly above top of roof (measures 0.06in).
