I know your post is from over a month ago, so you have probably figured this out already. I am working from memory here so take this with a big grain of salt.
- The crank angle sensor (CAS) is different between -93 models and 94+ models. I think the connectors are different too. They have the same number of pins though, just different manufacturers (Mitsubishi vs Hitachi, just like there are diff brand distributors on some year Nissans and diff alternators, etc...).
- I think the injector connectors are different (but supposedly the subharness connector that connects the main EFI harness to the injector subharness is the same and has the same pinouts so you can swap them. I never had to confirm this.)
- I think the lower subharness connector might be different (the one that goes to alternator and trans), but I am really fuzzy and uncertain about this one.
- Depending on if one engine has TCS and one doesn't, you may have extra/missing/different connectors around the throttle body. Not 100% on this one either since mine did not have TCS
Good luck and post discrepancies if you find them.