Have you read the plenum guide.....? on Q45.org, most of this is answered there...
there is no overlap between plugs and plenum to speak of... The valve covers have nothing to do with each other...
Youll be able to access every injector when the plenum is off..... You should consider having your injectors cleaned at that time if you dont mind a longer downtime... One of our sponsors does this.....
zerothread?id=138400
CHeck that info out, if you have them cleaned, evne at the basic level, you will have achieved a new level of idle smoothness.....
Definitely consider new KS when your under there too... Check your ECU codes too.. I kinda showed you how to do that, if you need more guideance let me know....