Heh guys,
I will try my best to address all questions.
Difference in swapping the sr into the 89-90 is the need to aquire a different power steering line, from a 91-94 car.
You can use a hondata rom burner to burn chips for your SR ecu, but you will need to locate a distributor with daughter boards, and a compatible firmware/software combo to read/write chip data through the hondata.
The AFC neo is the WORST upgrade for the sr20 because it utilizes DIS ignition timing based off of the AFM signal. As you use any air flow meter manipulator (AFC etc) to change the AF/ratio;tune for larger injectors;tune for a different turbo, you will change the ignition timing in unknown quantities.
The Power FC offers a great solution for the 450whp and under class, but, you will need it PROFESSIONALLY tuned, or be talented yourself, and either you or your tuner be in possession of the official "Apexi Power Excell Software", or the more popular third party hack out of New Zealand, the FCLoggit.
There are many, many, many Daily driven SR's over 300whp, but they were not fly by night projects, they took leadership, planning, and a focus on the total project.
The best answers I could provide for management solutions are:NOT AFC.Power FC if you have the resources.Plug and play replacement ECU, like the
http://www.rpsport.net/category/haltech_info/ Haltech or AEM EMS.
Doing this, you will definitely be doing it right!