I'm going to assume that he had the ECU reflashed to handle the Z32 MAF since it was running fine at one point.
Z MAFs are not a simple drop in affair. The plugs are different, so you have to do some rewiring to make it work.
http://www.heavythrottle.com has a how to on wiring the Z MAF in.
The ECU has to be told what kind of airflow meter you're using. The stock S13/S14 MAF is the same as SOHC KA MAF. However, if the ECU was reflashed to handle the Z MAF, you won't be able to slap a stock MAF back in place.
The Z MAF requires some rewiring to work, and you've already mentioned that his wiring was in question anyways. I would double check his wiring job, and make sure it was done properly. If he just twisted some wires together and taped them up, he's just asking for something to go wrong. Especially with something like the MAF.