custom is the way to go... there are plenty of programs out on the net to aid in optimum volumes, shapes, types, etc. Many sub-specific things factors come into play. Get your sub spec's in hand, dig around for the programs mentioned above, and be prepared to do a little math(when you have the volume it is simply a matter of geometry).
I took the time to build a dual 12" box for my two Blaupunkts... check out
http://www.the12volt.com. I would reccomend a simple sealed box.
Measure your dimensions of the trunk carefully, I was _very_ close in fitment after I got carpet on the box...
...oh and make sure to use 4" screws when securing the box to the floor of the trunk...j/k
HTH,-Jamie