I usually use a 63 auto redtop SR ecu. However for emissions I used an E5 manual blacktop ecu. People say the early blacktop ecu and redtop ecu are interchangable but I did notice differences. If you have a blacktop and are running a 63 you may get some odd stumbling levels at freeway speeds. It was hard to keep my car at freeway speeds when running my redtop with a blacktop ecu. It was running very lean and I had to use an SAFC to compensate.
I think the difference between the ECU's is the O2 sensors. Supposedly redtop and blacktop ecu's are different.
http://www.store.yahoo.com/pha....html
Other than that there is very little difference between them. I would try to get the blacktop ecu either E5 or E6, there are blacktop ecu's numbered J4 or some other J (the auto version) but they need some repinning before working or else they will only fire one cylinder.
Try to get the proper ecu if possible.