Check to see if the ignition wire is wired to ecm, think there was only like 6 wires I wired inside the cab when I did my swap. IIRC there was a wire for IGN signal to ecm. You cant trust on what someone else did, so just double check all your connections. Check if all your sensors are plugged in, all that stupid $h!t.
See if you have any codes in the ecu after you crank the motor over several times, and just go from there.
Also this might aid you in diagnosing it, if you haven't see this yet
http://nico.zeroforum.com/zerothread/92829