Wow got lucky... #6 pin on the ecu wasn't getting a very good connection, to the ecu. Getting that debugged was difficult cause continuity ran through everything the pin just was pushed back a bit.
Anyways in case anyone is reading this in the future. This is how the r32, rb20 or rb26 controls the spark. I would also assume this is the same for the 25. The ECU has 6 seperate ignition wires which "talk" to the ignitor/power transistor. The power TR then essentially charges the coil (actually while ECU gives it a "high" signal), then once the ECU drops the signal "low" the power transistor stops charging the coil, fields break down, blah blah blah and the spark plug fires. So basically if you are checking wires, check from the ECU plug to the "in" (6 pin connector) on the power transistor, then check from the power transistor "out" (7 pin connector) to each individual coil "-" wire. Thats basically how the system works, if you need more help feel free to email me.
Ok now with that figured out, I have a new question.. Here is where I stand:- I have everything connected except for vac lines (namely the AAC stuff), and the MAF.- I get a signal from the ECU to injectors. AND I have pressure at the rail. READ I HAVE FUEL- I have spark on all 6 cylinders verified with my own eyes.- Compression seems good, gives the starter a decent work out.- Car will turn but doesn't seem like it wants to fire, not even a studder.
I know the ECU should be mad about the MAS not being there, but shouldn't it try to run?
MurrayBTW ecu now flashes 55 before trying to start and 55 afterwards. Its as happy as a rb20ecu can get

, esspecially now that it has control over cylinder 6.