I am guessing it's due to the factory intake piping being removed and having the K&N setup installed. The factory one is all plastic with an intake box and resonators which all helps reduce intake noise. The new kit is a alloy tube and a pod-filter (I think?). The alloy tube will also generate more resonance than what the plastic noise is.
Look at this
http://www.youtube.com/watch?v=9ocAlvufiR4
Is it similar to the noise when he blips it after the kit's installed?