See? Now we're getting somewhere! I'm really not being a b**** when I tell people to read more. I tell it to everyone, and it's something I believe in and do myself constantly. I don't mind teaching people something new, but I don't care to teach them the collective science and theory behind something along with it. So I give them the important parts. Then its up to them to go read up on what they don't understand and try to fill in the gaps to the best of their ability. Get as far as you can, THEN come back with new questions. I don't feel that's unreasonable, and I hold myself to the same standard.
Youre half right on the restriction thing. Up to a point it does accelerate the air. Beyond a point it causes a blockage. Inversely, with a wider opening, below a certain point, you lose velocity. Thats why (generally) long intakes get better low power and short intakes get better top power - both slightly at the cost of the other. So you are exactly right about the short air intake, too. So what you do is, I figure, you use the intake to gain one aspect of power, and the cam setup to compensate for it or offset it - or however you want to look at it. You config one for low end, and the other for top end. Then in theory you get both. Ish. So like, intake set for low end, cams set for top end - or vice versa.
IIRC torque grabs before HP, so I'd see how much the intake setups and cam setups - separately - affect the low and high end, and then decide wich I wanted to use for what. Whichever of the two affects tq more is what I'd prioritize, then set the other for the top end.
As for exhaust, I think stock is 2.25. Increasing to 2.5 should be fine if youre going to increase it. Too big and it may not scavenge the exhaust right due to the same low density / acceleration problem
As for the HG, I'm not sure how that would affect things regarding a tune or power increase.
FSM says you should run at the least 91 octane at the very minimum - that you *can* run on lower (as low as 87), but performance will suffer (FSM Pg. GI-4). So you should be running higher grade anyways if you can

My KA always ran like mud if I put regular in her. Always 93.
I don't know that you'll get more overall power, but I'm pretty sure you should be able to jiggy out some slick throttle response / acceleration.