yea they can squeeze through there... i had a mouse chewed up some of the under-the -hood padding as well...
they can also enter through a rubber body plug/grommet, but start there i guess...
then there is also some type of vent that equalizes the pressure when you close your doors... air escapes out of that area so the windows won't "blow out" usually near the rear end of the vehicle covered by the plastic bumpers or can be found by peeling some interior trim pieces off to see the sheet metal
Its a PRV, or pressure release valve. It provides an outlet for air when you shut the doors, or you would pop your eardrums.
so that's another thing to check for...
http://www.nicoclub.com/FSM/quest/2004_Quest/bl.pdf
scroll down to page 247 & i'm guessing it's near #22