That definitely sounds like a strange issue. For starters i would definitely check ALL grounds to verify that they are not corroded and also that they are attached. I would definitely start off by trying another ECU that may definitely be the problem.
What would be more likely is that the ground going through the harness would actually be bad somewhere in there. Possibly try checking the resistance between the wire that was cut and the pin on the ecu plug. That is great that you have pin-pointed your problem, i would definitely suggest trying another ECU and if that is not the case the only thing it could be is wire in the harness.
Good Luck!
Pin Wire Description
101 W/B Fuel Injector # 1 Drive Input
102 O/L EAI AIV Control Solenoid Output
103 G/B Fuel Injector # 3 Drive Input
104 B/P Fuel Pump Relay
105 R/W Fuel Pressure Control Module
106 G/Y A/C Relay
107 B Fuel Injector Ground
108 B Fuel Injector Ground
109 R ECU Current Return
110 Y/B Fuel Injector # 2 Drive Input
111 O/B Turbo Boost Pressure Control Solenoid
112 L/B Fuel Injector # 4 Drive Input
113 SB Auxiliary Air Control, Idle Speed Control
114 Br/Y (unknown function)
115
116 B Fuel Injector Ground
1 R/W Ignition Signal # 1
2 R/Y Ignition Signal # 2
3 Y/R Tachometer Signal Output
4 R/B ECU Relay
5
6 B Ignition Signal Ground
7 G/B Receive (Control Unit Data Reception) RX
8 R/G Ignition Signal # 3
9 R/L Ignition Signal # 4
10 G/Y A/C Relay
11
12 P/B Automatic Transmission Gear Select
13 B Ignition Signal Ground
14 G/W Clock (Synchronization Signal) CLK
15 G Transmit (Data Sent From Control Unit) TX
16 W Mass Air Flow Sensor Signal Input
17 B Mass Air Flow Sensor Ground
18 L/O Engine Coolant Temperature Sensor Input
19 W Oxygen Sensor Input
20 W Throttle Position Sensor
21 B Sensor Ground
22 W Cam Angle Sensor 180 Degree Signal
23 G/R CLK Data Link Connector For Nissan Consult
24 / Malfunction Indicator Lamp (Add Wire For Check Engine Light)
25 O/B Exhaust Over Temp Warning Lamp Output
26 L/Y Exhaust Temperature Sensor
27 W Detonation/ Knock Sensor Input
28 W/L Automatic Transmission TPS (Kick Down Switch)
29 B Sensor Ground
30 W Cam Angle Sensor 180 Degree Signal
31 B Cam Angle Sensor 1 Degree Signal
32 Y/G Vehicle Speed Sensor
33
34 O Start Signal
35 G/O Park/ Neutral Position Switch
36 B/R Ignition Switch
37 Lg/R Throttle Position Sensor Power Output
38 B/W ECU Power
39 B ECU Ground
40 B Cam Angle Sensor 1 Degree Signal
41 L/G A/C ON Switch
42 Br/Y Automatic Transmission Gear Select
43 Pu/W Power Steering Oil Pressure Switch (Helps Idle When Turning Wheels)
44 Lg/R Automatic Transmission Gear Select
45 L/W Intake Air Temperature Sensor
46 R ECU Backup Power
47 B/W ECU Power
48 B ECU Ground