Actually the Toyota Hybrid design does not have an alternator in the traditional sense. There is actually two electric motors in the system one generator and the other is the drive motor/starter for the gas motor. They call this a full hybrid due to the fact that the system can charge and drive the car at the same time with the gasoline and electric motor.
The 12V system is charged thru a DC to DC converter. You will notice if you measure the 12V system when the car is on, the system seems to maintain a good 13.9V.
Here is a interesting link to see how the system works if you are interested. You will see why the system can not maintain EV mode beyond the 42mph point.
http://eahart.com/prius/psd/