Wheel spacers correct offset, nothing to do with subframe.
The sub frame spacers can go either on top or bottom to realign your subframe to react to different situations, they are meant to change the angle that your subframe sits at, not directly meant to stiffen it up. You can get the collars which go on top and bottom on all of them, but those are different from spacers, they are meant to totally stiffer the old bushing. You can also get replacement bushings for your subframe which may get rid of the clunk. I found that
http://www.splparts.com has all those parts, go look there for descriptions of the different sub frame parts.