I doubt that A/C and transmission issues would have any correspondence to each other. I would rule that out.
If you haven't read this thread yet.. I'd suggest doing so.
zerothread?id=96505
Read it cover to cover.. you'll find a bunch of great info in there about the transmission and some related sensors and wiring that impact how they work.
After reading it.. let us know if it helps, or you have further questions.
By the way... if you come down to the point where you need to make a decision on repairs... Don't spend much money fixing an auto trans.. You can do a 5 spd conversion pretty easily for around $500. It would be a great upgrade for your car rather than repairing the old slushbox.