I run a stinger 150 amp breaker ~6" from the battery.
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I don't think not having a fuse would have fried the ECU, because even with a 150 amp fuse.... the ecu would explode at far less then that.
Injectors get constant power, and are grounded by the ecu to squirt fuel. I would just check that they're getting power and verify the wiring back to the ecu is good.