My guess is bad wiring, or a really bad ground. There was a guy up here in WA that blew 2 ECU's. We opened them up and located the circuit that blew out. It was traced back to the Ignition On pin, which controls the fuel pump among other things. So whenever the ECU would blow, the fuel pump would no longer get a signal and the car couldnt start.
Its almost like deja vu, the guy drove his car fine for a few weeks. Then blew the ECU. Put in another one and blew it after 7 minutes. I do believe we traced it to a horrible gound for the negative battery terminal. Also his battery tray wiring was a little messed up.
Try opening up the ECU and look for fried circuitry. Then trace it back to the pin and figure out which wiring is causing the blown ECU's. Heres the pinout
http://sr20det.nismo.org/srtech.htm
If you find that you had the same problem as this other guy, try talking to him on aim to see what he did to fix the problem (sn= jdm24zero).