Ok here goes.....
-Wiring harness from the NA is lacking some TT components, general rule of thumb on a Z32 is "if the motor comes out, replace the harness" and I can testify to that being true. Keep in mind his stock NA one is 15 years old and won't work but has seen better days, the one with the JDM motor has taken a beating and being exposed to everything isn't worth having. Contact Coz at
http://www.conceptzperformance.com as he has some of the now discontinued engine harnesses, tell him Jerry Taylor sent you, he'll hook you up. Also make sure that you have a twin turbo ECU.
-By intake manifold do you mean the plenum up on top of the motor that the TB's are hooked to? If so I'm pretty sure the TT and NA ones are different. I could be wrong though so don't quote me.
-Swap will take awhile, its kind of a pain. Be ready for an adventure.
Feel free to reply or to e-mail me with any further questions that you may have.
EDIT : SORRY THIS IS NSRZ32...MY GIRLFRIEND WAS SIGNED IN ON THE COMPUTER AND I DIDN'T REALIZE IT. I WILL REPLY AS WELL SO YOU HAVE MY CONTACT INFO IF YOU NEED IT.