This is (IMO) the best way to do it. It was cheep, easy, and effective.
Cut and weld (or make new ones like I did) the motor mounts (not the aluminum part) 3/4" shorter. Place the engine in the bay where you want it by setting it down on the skyline x-member. Use a pry bar to push it around. It helps to have the trans connected (but will bell housing bolts loose) so you can get an idea of the correct possition. Mark where the mounts are sitting on the x-member and drill new holes on the x-member. This will position and mount your motor correctly.
And for the trans, get 2 7"x1.5" 1/4" thick peices of steel (Im overestimating the measurements, you can always cut them) for the trans mount. Turn the KA trans x-member 180 degrees. 1 hole should line up with the existing hole. Put the steel btwn the chassis and the x-member. Mark that hole and drill a thru hole in it. You will put a bolt here that will go thru the x-member and into the chassis. Where the chassis hole lines up with the other end of the steel, drill another thru hole. A bolt will go here and go thru the steel and into the chassis. As for the last hole, drill and tap a hole here. You will bolt the xmember to this.
If you need pics, email me
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