The "tiny tubes" that ran on the stock mid pipes were your AIV tubes. Did you plug them at all as well as the electronic component in each of the fender behind the splash shields.
Just wank the whole system, if you are unfamiliar with the kit and the layout then here is a link.
http://www.twinturbo.net/ttnettech/aiv/aiv.html
But pretty simple, plug the holes, pull the system and plug vacuum lines.