Quote »I wish you could just do mass downloads... [/quote]Why not?
Use the GNU web-get program from the Free Software Foundation.
Using 'wget', you can download every PDF in a entire web site, or mirror the complete site, or get whatever you want. It handles everything, including passwords, robot files, lists of web sites, multiple levels of hierarchy, etc.
I use wget v1.9.1 all the time in my new job to back up internal web pages and to find outdated links in external web pages automatically.
Pick up Windows pre-compiled binaries at
http://www.gnu.org/software/wget/wget.html
The Windows wget syntax is simple:Start ... Run ... cmd ... wget -prA.pdf
http://domain/site/page.html
Using wget, you automate what would otherwise be done by hand.