The coil packs are different, connector wise and function wise. S1 uses an inline igniter like the SR20's and S2 does not. S1 has the brown connectors on the coil packs and the S2 has the gray ones.
The S2 requires an FICD and the S1 doesn't. But thats only for the A/C, it bumps the idle when the A/C relay cuts on.
If you has S1 coil packs and igniter this would work fine for you.
You should just get our engine harness and we will make it all work together =)
http://www.chasebays.com/product/nissan ... an-rb25det