I ran my power wire across the top of the engine bay (with the brake/clutch fluid lines) and into the hole where the cable to the hood popper goes in. The hood popper comes out of a black rubber boot under the clutch fluid reservoir, I just cut a hole big enough and slid it through.
I don't know if it applies to the power wire, but I keep all my wires away from each other. Im pretty sure if you run the RCA cables with the power wire it will cause noise from the speakers.
I am going to put a 12 in my spare tire well...here is my plan: Using the carpet as a template, cut a board to cover the whole bottom of the trunk. Make up some spacers for every side to raise it up enough that the bottom of the speaker will fit, I am going to put each amp on either side of the 12 underneath the board, with plexiglass over them. Then Im gonna seal the edges of the board with acoustic caulk or whatever to try to get it as sealed as possible, then fiberglass the board to make it look nice. Oh, and I already have the bottom of my trunk covered with Dynamat.
I don't even know if a 15" box will fit in the trunk of a 240sx. I have only seen them in s13 fastbacks. Last time I checked it was pretty hard to find a 15" box anyway, but that was a long time ago so they might be easier to find. You could do that, but the sub in the spare tire well is so much cooler .
Here is a site I just found that tells how to do this, and a million other things...
http://www.bcae1.com/fibrglas.htm