LMAO, I actually saw that car for sale and contemplated getting it. Had it of been a 1988 model it would've been in my driveway a long time ago. Question: Why don't you just keep the Pulsar and drive it? If you're wanting to be unique you're already there driving a Pulsar, lol.
Anyways, I've never deleted emissions from a CA16, but I'd imagine it's like everything else I've done it on. Remove everything, block things off, and leave it at that. BTW, you're going to have a tough time rebuilding that thing. We've been able to source just about everything to rebuild a CA18, but the problem you'll have is finding rings. Nissan only made that motor in that one car for that one year, so needless to say those rings are far and few between. But, if I were to try, I'd look here:
http://www.importperformanceparts.net/
There are a few problems you'll run into attempting to put that motor in a Civic. Most of which you could overcome if you have mad fabrication skills, but thing that sticks out to me would be the axles, since I'm sure the length, splines, and diameter won't match up. Regardless, I don't think the swap would ever be worth it. If you really want to do anything with that Civic, I vote a B-series swap. Idk much about Hondas, but even that would be a feat to achieve because I think that chassis is nothing like other Hondas from 1988 and up. So a real word of advice, get a totally different car to start with as a base. You'll spend less money, go faster, and have a much smaller headache.