No it is not designed differently.. All nissan/infiniti's with bose come with line driven headunits that send an amp trigger signal to the door amps/speakers. It might look physically different, but, if you retrofit a late 90's pathfinder headunit, it will work with the right harness.
I own a 93 J30T. When I researched headunits 1.5 years ago, the wiring harness that was in my car was identical to a 92-94 maxima. I took a gamble with a metra harness and Digital multi meter and traced the wires to be identical. Currently that metra maxima harness is feeding my Pioneer GPS/DVD combo unit in the dash and works fine. In 1994 and up, the J30 has the updated harness similar to the 95 maxima Here is a link to the conversion harness you will need if you want to use a 95 and up bose unit in an older J30:
http://www.courtesyparts.com/M...IN-03
Fixing these bose headunits sounds like proprietary info if you look up websites like carstereohelp.com. My suspicion has always been crap capacitors and resistors since one of the widely known bose amp fixes has been to replace capacitors in the door amp that leak and swell. I have never been a fan of bose, and removing it from the car acceptable to me.