I have done a engine trans (together) and serviced rod bearings from the bottom, also have pulled both from the top, you will not want to pull them both from the top unless you are junking the car as the angle of everything while pulling is extreme even with a lift and no consideration for the car it was no cake walk. What I have never tried is a engine only out the top but see no reason it would be difficult.
Not sure you want to hear this but as a master mechanic and guy that races a J you need to ditch your damaged engine and shop for a clean replacement motor with 150,000 or so miles, do a timing belt, water pump and tune up and wind up +$1000 ahead of trying to repair what you have and likely wind up with less headache.
Been there and had success changing rod bearings but I caught them right before they spun, once that happens you need a complete rebuild.
