So I noticed my sunroof isn’t really aligned well, like it doesn’t look flush. I wanted to know if anyone else having this issue? It’s not Leaking or anything yet and I hope it doesn’t, but if anyone is having this issue what did you do to fix it?

If you think this misalignment is a new issue, open the sunroof, you should see some medium sized screws around the outer frame. Make sure they are down tight. If you think it may have been like this from the beginning, it might just be a quirk on your particular car. I don't know if the glass panel actually has alignment adjusters like a bonnet or boot lid.