I agree with you that the dealer might just take your money and only tell you, there is a communication problem. You might want to wait (although I am very reluctant to advise waiting) and go to which ever parts store is near you that scans for free to have a "real" code pulled.
You really might want to get a scanner yourself. Even if you do not plan on or are equipped to fix this yourself having a scanner is a good thing to have nowadays.
http://www.amazon.com/s/ref=nb_sb_ss_i_ ... ii+scanner
There is one for every budget all you want is a simple reader.
I must caution you though if you do get one. DO NOT CLEAR ANYTHING. Sometimes the Freeze frame data associated with the dtc is more important to the diagnosis than the code number.
To answer your last question, yes in most states an illuminated CEL is an immediate disqualifier for emissions certification. That is the exact thing and emissions test is used to detect. There are certain qualifiers that an emission test itself looks for, called System Rediness Test (SRT) having a DTC stored like this you will not be able to set the appropriate qualifiers.