You went under the car using scissor jacks? You're a brave man. I did it once or twice long ago. It's not that the jack will collapse, the problem is that it's base is so small (unstable) the car will easily topple it over. If you're working well under the car, you'll get you'll break a few ribs. Use jack stands or ramps. I bought two ramps from pep boys the other day for $30, man it was sweeet just riding up on them and being able to work on the car, no need to jack it up, lower onto jack stands, and then have to repeat that when you're finished. Just roll on and off.

Yeah, that's a little bit too long concerning jacks. oh well.
To the original question. You said "now" you're wiring is messed up. If it was good before then you can fix it again. If you had bought the car with wiring problems then it would be more difficult to figure oiut whats wrong. But you should know what you've done so far to the car, trace your steps back and see if you crossed wires, left wires hanging etc..