Unsurprisingly, it had a blown head gasket, as well as a bunch of other junk wrong that had to be fixed. Being that I was all in, I changed the header gasket out myself (replaced with copper sprayed Fel-Pro gasket), repairing whatever I could on the way in and on the way out.
However, it still has some issues running, trouble at idle, missing, etc. Still trying to diagnose the problem, I hooked up to the OBD port, no good. Checked fuses, found one missing, replaced it, OBD now on, but not working right. Hmm.
Took panel below steering column off, and found this insanity:

This would explain why once the fuse is in, an I tried to lock the doors, it would automatically unlock them.
I have double and triple checked the VIN numbers on the dash, transmission, and the plate on the inside of the engine compartment. All the information seems to match up exactly with a CARFAX report. I have it registered and inspected by the local highway patrol. I'm fairly certain it isn't stolen, just incredibly poorly treated.
Any suggestions on how to proceed to rectify this mess, so I can get back to work on the engine?
