that's really odd because usually the ECU will limit boost to 7psi for the next 50 startups if the knock sensing sets off the boost safety mode. each turbo feeds one side of the block so when you get a boost leak in one hose, one bank runs lean and the other runs rich as the ECU bounces back and forth adjusting cam timing/fuel/spark. the system works, I guess they just thought it would be too expensive to run six separate exhaust pipes and mess with the volumetric efficiency. one cylinder runs rich, it thinks they're all running rich, then one runs lean...
what's usually recommended when you're increasing your exhaust temps is to move the sensor further down the line so that the exhaust temperature will be in the correct range for the o2 sensor to self-clean and operate properly. a spacer will help with the eratic readings. by giving false readings.
I'd suggest going for the haltech or a complete aftermarket ECU that your local dyno is familiar with. nistune is a good product, expensive...but nah its really not that great. after market ECUs have higher bit precision and response giving you tighter control over ignition and injection. I know the haltechs do offer a good deal of continued support for their products. if you want to change the MAF to a larger unit, nistune can sort of manage but it still only has a 16 bit map. if you want to install a wide band O2 sensor, nistune requires that you take your narrow band sensor out, put the wide band in, have it connected to a laptop then swap it out again when you want to drive it while an after market ECU will let you leave it in and actually use it. if you want to double your injectors, nistune wont help and you'll need to throw on a piggy back. if you want to add more sensors that actually affect the engine in realtime, nistune wont help. the nistune tends to be a false economy because once you've done the initial tune, its job is done. really no more benefit than taking it to a dyno and having them flash a 2$ eprom. if you want to save money and people do this, you can hook up your own wide band sensor, adjust the injector multipliers and expand the fuel maps and kill that ridiculous exhaust reduction plateau they put in along with the smog pump that barely got it past emissions. there's even a hack i've done for the 27C256 EPROMs where you can use the next chip up, a 27C512 and add a switch to toggle between the two dies it's made of so that you can switch tunes or use the 29F series because you can easily rewrite them without a UV lamp. I just say haltech btw because Australia and that's what people use here but i have no idea what other brands there are in the US.
just for a comparison between a typical nistune job and a professional job, this is a DIY nistune job. you can still see the EGR plateaus that they've tried to smooth out a bit but they're still fairly extreme.
this is a mines tune I extracted from a stock TT engine tune that I posted in the first thread i made. feel free to ask any questions about electrical. except for the race work he does, his philosophy was more about making a better all round casual car for all weather conditions. so he was very popular with casual owners. I mean to say that he definitely improved their vehicles but he didnt push them. his AFR was set for 10.88 at its richest(also interesting is that he wrote the same maps for the knock maps on the timing and fuel values essentially bypassing the knock reduction scheme).
I couldnt quickly find a z32 map for a modern 32 bit controller but this illustrates the biggest difference.
the 16 bit ECUs can only have 16x16 bit maps. the 32 bit MCUs in modern ECUs have 32x32 bit maps. which is 4X the accuracy. as the vehicle moves through ranges of values, it refers to the memory in the EPROM or emulated memory in nistune which still has the same limit. until it reaches the upper or lower threshold of each value, it doesnt adjust its output values. for each square in the 16 bit ECUs, the 32 bit ECUs get 4 making the tolerances tighter and giving you finer control. there are other differences as well, like the better modern DACs for turning the voltage values of sensors into digital values it can understand and instead of polling the sensors, checking the values in order every so often, they use layered threading for near realtime processing which means it ignores the sensor until it gets a signal telling it that a sensor value has changed and almost instantly responds to it. And OBD2.
and another point about deleting the EGR system. it effectively reduces displacement by partially filling the combustion chambers with inert gas which is really important for a stock setup and even more important with larger injectors if you want to be able to idle in traffic. the AIV will hunt and it will run very lean without it and get hot. also the AIV cant really compensate because it injects air in a different position while the EGR injects exhaust right infront of the throttle body so it mixes with the incoming air. you can get around it by adjusting the throttle position sensor out of the reference values to raise the idle speed, preventing it from cutting out when the vacuum overcomes the engine at lower revs. but it also means having a stronger clutch because you'll be starting at higher revs or a torque converter with a higher stall point in an auto. And you'll need to adjust your turbo spool so they dont kick in at the lights or when you turn the aircon on.